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Lineex Pubmed Mcp Smithery

lineex/pubmed-mcp-smithery

Connects Claude to PubMed's E-utilities API for medical literature searches with structured query support. You get five main operations: keyword searches with journal filtering and date sorting, MeSH term lookups for standardized medical vocabulary, publication count comparisons across terms, detailed paper retrieval by PMID including abstracts and authors, and PICO framework searches that combine population, intervention, comparison, and outcome terms with synonym support. Reach for this when you need to programmatically search medical literature, build evidence tables, or run systematic literature reviews without leaving your Claude conversation. Includes automatic retry logic to handle NCBI rate limits.

tools: 5
auth: Secret needed
transport: HTTP
last updated: Sep 16, 2025

Tools

5 tools

Public tool metadata for what this MCP can expose to an agent.

search_pubmedSearch PubMed for articles matching keywords with optional journal filtering

Search PubMed for articles matching keywords with optional journal filtering

No parameter schema in public metadata yet.

get_mesh_termsLook up MeSH terms related to a medical concept

Look up MeSH terms related to a medical concept

No parameter schema in public metadata yet.

get_pubmed_countGet the count of publications for multiple search terms

Get the count of publications for multiple search terms

No parameter schema in public metadata yet.

format_paper_detailsGet detailed information about specific papers by PMID

Get detailed information about specific papers by PMID

No parameter schema in public metadata yet.

pico_searchPerform structured PICO (Population, Intervention, Comparison, Outcome) searches with synonyms

Perform structured PICO (Population, Intervention, Comparison, Outcome) searches with synonyms

No parameter schema in public metadata yet.

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Readme

PubMed Enhanced Search MCP Server

A Model Content Protocol server that provides enhanced tools to search and retrieve academic papers from PubMed database, with additional features such as MeSH term lookup, publication count statistics, and PICO-based evidence search.

Features

Search PubMed by keywords with optional journal filter
Support for sorting results by relevance or date (newest/oldest first)
Get MeSH (Medical Subject Headings) terms related to a search word
Get publication counts for multiple search terms (useful for comparing prevalence)
Retrieve detailed paper information including abstract, DOI, authors, and keywords
Perform structured PICO-based searches with support for synonyms and combination queries

Installing

Prerequisites

Python 3.6+
pip

Installation

Clone this repository:

git clone https://github.com/leescot/pubmed-mcp-smithery
cd pubmed-mcp-smithery

Install dependencies:
```
pip install fastmcp requests
```

Usage

Running locally

View the full README on GitHub

Details

Repository: github.com/lineex/pubmed-mcp-smithery
Category: Search & Web Crawling
Transport: HTTP
Auth: Required
Registry: MCP registry, active

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