Plant Genomics
A comprehensive genomics toolkit that wires Claude into 11 plant biology databases: Ensembl Plants, Phytozome, UniProtKB, Europe PMC, QuickGO, NCBI BLAST, Gramene, KEGG, STRING-DB, ATTED-II, and BAR. You pass it a locus identifier like AT1G01010 and get back gene metadata, cross-references, protein records, literature mentions, GO annotations, homology trees, pathway memberships, protein interactions, coexpression neighbors, and tissue-specific expression profiles. The 32 tools split into single lookups, parallel batch operations, and cross-source synthesis calls that merge data from multiple backends. Reach for this when you're doing comparative plant genomics, pathway analysis, or need to pull together fragmented annotations across disparate public repositories without writing custom scrapers for each one.
- GitHub stars
- 8
- tools
- 43
- transport
- STDIO
- last updated
- Oct 27, 2026
Tools
43 toolsPublic tool metadata for what this MCP can expose to an agent.
ensembl_plants_lookup_locus
No parameter schema in public metadata yet.
phytozome_lookup_locus
No parameter schema in public metadata yet.
get_gene_xrefs
No parameter schema in public metadata yet.
bar_gene_summary
No parameter schema in public metadata yet.
tair_locus_info
No parameter schema in public metadata yet.
maize_gene_model_translation
No parameter schema in public metadata yet.
get_sequence
No parameter schema in public metadata yet.
blast_sequence
No parameter schema in public metadata yet.
resolve_locus_to_uniprot
No parameter schema in public metadata yet.
uniprot_id_mapping
No parameter schema in public metadata yet.
interpro_domains
No parameter schema in public metadata yet.
alphafold_structure
No parameter schema in public metadata yet.
experimental_structures
No parameter schema in public metadata yet.
locus_go_annotations
No parameter schema in public metadata yet.
locus_plant_ontology
No parameter schema in public metadata yet.
locus_gene_rifs
No parameter schema in public metadata yet.
go_enrichment
No parameter schema in public metadata yet.
locus_literature
No parameter schema in public metadata yet.
kegg_pathways
No parameter schema in public metadata yet.
plantcyc_locus_info
No parameter schema in public metadata yet.
string_interactions
No parameter schema in public metadata yet.
experimental_interactions
No parameter schema in public metadata yet.
bar_aiv_interactions
No parameter schema in public metadata yet.
atted_coexpression
No parameter schema in public metadata yet.
bar_efp_expression
No parameter schema in public metadata yet.
gramene_homologs
No parameter schema in public metadata yet.
ensembl_plants_paralogs
No parameter schema in public metadata yet.
orthodb_orthologs
No parameter schema in public metadata yet.
panther_family
No parameter schema in public metadata yet.
gene_tree_members
No parameter schema in public metadata yet.
entry_members
No parameter schema in public metadata yet.
tf_binding_motifs
No parameter schema in public metadata yet.
jaspar_motif
No parameter schema in public metadata yet.
locus_variants
No parameter schema in public metadata yet.
vep_annotate
No parameter schema in public metadata yet.
aragwas_associations
No parameter schema in public metadata yet.
arabidopsis_natural_variation
No parameter schema in public metadata yet.
ensembl_region_query
No parameter schema in public metadata yet.
ensembl_plants_assembly
No parameter schema in public metadata yet.
upstream_release
No parameter schema in public metadata yet.
batch_locus_call
No parameter schema in public metadata yet.
consensus_homologs
No parameter schema in public metadata yet.
gene_report
No parameter schema in public metadata yet.
Sponsors
Agent CaffeineSponsoredClose your lid, come back to finished work
SnugSponsoredThe clipboard manager for the AI eraPromote your product hereReach 125k+ visitors monthly
WaxSponsoredBlock anything with supervision, without erasing your iPhonePromote your product hereReach 125k+ visitors monthly
knobsSponsoredSee your site on any phone, any day, in any languageReadme
plant-genomics-mcp
plant-genomics-mcp is an MCP server that lets AI agents look up plant genes in 24 free public databases, from Ensembl Plants and UniProt to KEGG, STRING and AlphaFold, with curated coverage of 12 plants.
Details
- Repository
- github.com/musharna/plant-genomics-mcp
- Website
- github.com/musharna/plant-genomics-mcp
- Package
plant-genomics-mcp- Transport
- STDIO
- Registry
- MCP registry, active