Protocolsio Integration

This wraps the protocols.io API v3 for managing scientific protocols from Claude. You can search for protocols by keyword or DOI, create and publish new ones with full DOI issuance, manage protocol steps and materials, handle comments and discussions, and organize everything in team workspaces. It covers the full lifecycle from draft to publication, including file uploads and OAuth flows for multi-user apps. Most useful if you're building lab workflow tools or need to programmatically document experiments. The reference docs break down authentication, protocol operations, workspace management, and file handling separately, which makes integration straightforward once you have your access token sorted.

skills.sh installs: 2K
GitHub stars: 56.6K
last updated: Aug 21, 2026

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Install

$ npx -y skills add k-dense-ai/scientific-agent-skills --skill protocolsio-integration --agent claude-code

Installs into .claude/skills of the current project.

Files

protocols.io Integration

Use the exact endpoint version documented for each operation. The official API landing page is still titled “API v3,” but its maintained sections mix v3 and v4. There is no single safe /api/v3 base to apply to every resource. The REST contracts were reviewed against the live official reference on 2026-09-30, with official MCP/help pages checked through rendered extraction. Examples use illustrative identifiers and are tested offline or with mocked transport, not an authenticated account.