mims-harvard avatar

Tooluniverse Pharmacovigilance

This is a structured framework for post-market drug safety analysis using FAERS adverse event reports, FDA labels, and pharmacogenomic data. It pushes you to quantify signals with disproportionality measures like PRR and ROR rather than just describing risks, and includes clinical reasoning strategies like on-target versus off-target thinking and timeline-based mechanism classification. The compute-first approach means you write Python to calculate statistics rather than theorizing. Good for investigating safety signals, comparing drug profiles, or building pharmacovigilance reports when you need actual numbers and not just label summaries. The pharmacogenomic integration helps flag genetic risk factors for specific populations.

skills.sh installs
424
GitHub stars
1.8K
last updated
Aug 21, 2026

Install

$ npx -y skills add mims-harvard/tooluniverse --skill tooluniverse-pharmacovigilance --agent claude-code

Installs into .claude/skills of the current project.

Files

COMPUTE, DON'T DESCRIBE

When analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.

Pharmacovigilance Safety Analyzer

Systematic drug safety analysis using FAERS adverse event data, FDA labeling, PharmGKB pharmacogenomics, and clinical trial safety signals.

KEY PRINCIPLES:

  1. Report-first approach - Create report file FIRST, update progressively
  2. Signal quantification - Use disproportionality measures (PRR, ROR)
  3. Severity stratification - Prioritize serious/fatal events
  4. Multi-source triangulation - FAERS, labels, trials, literature
  5. Pharmacogenomic context - Include genetic risk factors
  6. Actionable output - Risk-benefit summary with recommendations
  7. English-first queries - Always use English drug names in tool calls

When to Use

Sponsors

Details

Repository
github.com/mims-harvard/tooluniverse
Category
Python
First seen
Jun 3, 2026

More from mims-harvard/tooluniverse

All 68

Recommended

More Python
1maxazure avatarvideo-editingmaxazure/video-editing-skillXiaohongshu/RED-tuned short-form video workflow for raw voice-over, talking-head, tutorials, interviews, podcasts, long videos, screen recordings, B-roll, capti402skills.sh installs
2comet-ml avatarinstrumentcomet-ml/opik-skillsAdd Opik tracing to an existing codebase. Detects language (Python/TypeScript), identifies LLM frameworks, adds appropriate decorators and integrations, marks e389skills.sh installs
3galaxy-dawn avataruv-package-managergalaxy-dawn/claude-scholarMaster the uv package manager for fast Python dependency management, virtual environments, and modern Python project workflows. Use when setting up Python proje383skills.sh installs
4levnikolaevich avatarln-743-test-infrastructurelevnikolaevich/claude-code-skillsSets up test infrastructure with Vitest, xUnit, and pytest. Use when adding testing frameworks and sample tests to a project.378skills.sh installs
5mrgoonie avatarmcp-buildermrgoonie/claudekit-skillsGuide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when b315skills.sh installs
6mims-harvard avatartooluniverse-custom-toolmims-harvard/tooluniverseAdd custom local tools to ToolUniverse alongside the 1000+ built-in tools. Covers JSON-config tools (simplest, no code), Python class tools (REST/SOAP/GraphQL A290skills.sh installs