This is your onboarding command for the bio-research plugin. Run it when you first install the plugin or need to see what's wired up. It checks which MCP servers are connected (PubMed, ChEMBL, ClinicalTrials.gov, BioImage.IO, and more), lists the analysis skills available (single-cell QC, scvi-tools, Nextflow pipelines, data converters), and prompts you to say what you're working on so it can route you to the right tool. It's more of a diagnostic and orientation step than a workflow itself, but honestly, the grouped server checklist alone makes it worth running before you dive into a new project.

skills.sh installs
5K
GitHub stars
35.3K
last updated
Aug 21, 2026

Install

$ npx -y skills add anthropics/knowledge-work-plugins --skill start --agent claude-code

Installs into .claude/skills of the current project.

Files

Bio-Research Start

If you see unfamiliar placeholders or need to check which tools are connected, see CONNECTORS.md.

You are helping a biological researcher get oriented with the bio-research plugin. Walk through the following steps in order.

Step 1: Welcome

Display this welcome message:

Bio-Research Plugin

Your AI-powered research assistant for the life sciences. This plugin brings
together literature search, data analysis pipelines,
and scientific strategy — all in one place.

Step 2: Check Available MCP Servers

Test which MCP servers are connected by listing available tools. Group the results:

Literature & Data Sources:

  • ~~literature database — biomedical literature search
  • ~~literature database — preprint access (biology and medicine)
  • ~~journal access — academic publications
  • ~~data repository — collaborative research data (Sage Bionetworks)

Drug Discovery & Clinical:

  • ~~chemical database — bioactive compound database
  • ~~drug target database — drug target discovery platform
  • ClinicalTrials.gov — clinical trial registry
  • ~~clinical data platform — clinical trial site ranking and platform help

Sponsors

Details

Repository
github.com/anthropics/knowledge-work-plugins
Categories
AI & Agent Building, Data Science & ML, Sales & Marketing
First seen
Apr 16, 2026

More from anthropics/knowledge-work-plugins

All 198
1wshobson avatarscanwshobson/agentsScans the codebase to generate project-doc.md and AGENTS.md. Use when bootstrapping a new agent-driven repo, refreshing project documentation after architectura5Kskills.sh installs
2affaan-m avatardynamic-workflow-modeaffaan-m/eccDesign task-local harnesses, eval gates, and reusable skill extraction for Claude dynamic workflow mode and other adaptive agent harnesses.5Kskills.sh installs
3trkbt10 avatarindexion-wikitrkbt10/indexion-skillsProject wiki lifecycle — create pages, track source changes with ingest, update stale pages, lint structural integrity, detect code-to-doc drift with reconcile,4.9Kskills.sh installs
4affaan-m avatarintent-driven-developmentaffaan-m/eccTurn ambiguous or high-impact product and engineering changes into scoped, verifiable acceptance criteria before or alongside implementation. Use when a user as4.8Kskills.sh installs
5kunchenguid avataraxikunchenguid/axiAgent eXperience Interface (AXI) — ergonomic standards for building CLI tools that agents use via shell execution. Use when building, modifying, or reviewing an4.8Kskills.sh installs
6affaan-m avatarorch-pipelineaffaan-m/eccShared orchestration engine for the orch-* skill family. Defines the gated Research-Plan-TDD-Review-Commit pipeline, the size classifier, the agent map, and the4.8Kskills.sh installs