Dnanexus Integration
This one's for working with DNAnexus, the cloud genomics platform. You get five reference docs covering app development (building executables with dx-app-wizard, Python or Bash entry points), data operations (uploading FASTQ/BAM/VCF files, searching by metadata), job execution (running analyses, monitoring workflows), the dxpy Python SDK (automating batch processing, data migration), and configuration (dxapp.json setup, Docker integration, dependency management). The references include code patterns for common tasks like parallel sample processing and multi-step pipelines. If you're building bioinformatics workflows on DNAnexus or need to script data management across projects, this covers the practical stuff without digging through platform docs.
- skills.sh installs
- 208
- GitHub stars
- 33.2K
- last updated
- Aug 21, 2026
Install
$ npx -y skills add davila7/claude-code-templates --skill dnanexus-integration --agent claude-codeInstalls into .claude/skills of the current project.
Files
DNAnexus Integration
Overview
DNAnexus is a cloud platform for biomedical data analysis and genomics. Build and deploy apps/applets, manage data objects, run workflows, and use the dxpy Python SDK for genomics pipeline development and execution.
When to Use This Skill
This skill should be used when:
- Creating, building, or modifying DNAnexus apps/applets
- Uploading, downloading, searching, or organizing files and records
- Running analyses, monitoring jobs, creating workflows
- Writing scripts using dxpy to interact with the platform
- Setting up dxapp.json, managing dependencies, using Docker
- Processing FASTQ, BAM, VCF, or other bioinformatics files
- Managing projects, permissions, or platform resources
Core Capabilities
The skill is organized into five main areas, each with detailed reference documentation:
1. App Development
Purpose: Create executable programs (apps/applets) that run on the DNAnexus platform.
Key Operations:
- Generate app skeleton with
dx-app-wizard - Write Python or Bash apps with proper entry points
- Handle input/output data objects
- Deploy with
dx buildordx build --app - Test apps on the platform
Sponsors
Agent CaffeineSponsoredClose your lid, come back to finished work
SnugSponsoredThe clipboard manager for the AI eraPromote your product hereReach 125k+ visitors monthly
WaxSponsoredBlock anything with supervision, without erasing your iPhonePromote your product hereReach 125k+ visitors monthly
knobsSponsoredSee your site on any phone, any day, in any languageDetails
- Repository
- github.com/davila7/claude-code-templates
- Categories
- DevOps & CI/CD, Automation & Workflows, Python, Sales & Marketing, Cloud & Infrastructure
- First seen
- Jun 3, 2026
More from davila7/claude-code-templates
All 618- Exa Search208
- Labarchive Integration208
- Datamol207
- Pathml207
- Referral Program207
- Neon Postgres206
- Address Github Comments205
- Slack Bot Builder205
- Plaid Fintech204
- Daily Meeting Update203
- Github Actions Creator203
- Omero Integration203
- Opentrons Integration202
- Protocolsio Integration202
- Footballbin Predictions201
- Raffle Winner Picker201
- Avalonia Zafiro Development192
- Clickhouse Io192
- Salesforce Development192
- Feedback Mastery190
- Planning190
- Avalonia Layout Zafiro188
- Reducing Entropy187
- Difficult Workplace Conversations185
Recommended
More DevOps & CI/CD
codeckhiyeshu/codeckcodeck entry point. Scans local files for materials, shows pipeline dashboard with diagnostic intelligence, guides user to the next step. Use when the user says196skills.sh installs
cx-create-dashboardcoralogix/cx-cliBuild and deploy a Coralogix dashboard for a given service from its logs, spans, metrics, and service specs. Discovers telemetry via cx CLI commands, emits impo195skills.sh installs
cicd-expertpersonamanagmentlayer/pclExpert-level CI/CD with GitHub Actions, Jenkins, deployment pipelines, and automation190skills.sh installs
terminaluseterminaluse/agent-skillsCreate, edit, deploy, and interact with agents on TerminalUse. Use when user mentions "tu", "terminaluse", "deploy agent", "create agent", "edit agent", "update187skills.sh installsistio-expertpersonamanagmentlayer/pclExpert-level Istio service mesh management, traffic control, security, and observability for Kubernetes181skills.sh installs
ml-ops-engineerborghei/claude-skillsMLOps across model deployment, ML pipelines, monitoring, and feature stores. Use when deploying models to production, building training pipelines, setting up dr175skills.sh installs