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Latchbio Integration

If you're building bioinformatics pipelines and want to avoid wrestling with Kubernetes yourself, this integrates Claude with Latch's serverless workflow platform. You get Python decorators for defining tasks, automatic UI generation, and built-in cloud storage abstractions with LatchFile and LatchDir. The skill covers everything from basic workflow registration to GPU configuration and Registry data management. It's most useful when you're either migrating existing Nextflow or Snakemake pipelines to Latch, or writing new workflows that need proper resource allocation without manual infrastructure setup. The pre-configured task decorators (small_task, large_gpu_task, etc.) save you from constantly tweaking CPU and memory specs.

skills.sh installs
209
GitHub stars
33.2K
last updated
Aug 21, 2026

Install

$ npx -y skills add davila7/claude-code-templates --skill latchbio-integration --agent claude-code

Installs into .claude/skills of the current project.

Files

LatchBio Integration

Overview

Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines.

Core Capabilities

The Latch platform provides four main areas of functionality:

1. Workflow Creation and Deployment

  • Define serverless workflows using Python decorators
  • Support for native Python, Nextflow, and Snakemake pipelines
  • Automatic containerization with Docker
  • Auto-generated no-code user interfaces
  • Version control and reproducibility

2. Data Management

  • Cloud storage abstractions (LatchFile, LatchDir)
  • Structured data organization with Registry (Projects → Tables → Records)
  • Type-safe data operations with links and enums
  • Automatic file transfer between local and cloud
  • Glob pattern matching for file selection

Sponsors

Details

Repository
github.com/davila7/claude-code-templates
Categories
DevOps & CI/CD, Data Science & ML, Release Management, Automation & Workflows, Cloud & Infrastructure
First seen
Jun 3, 2026

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