google-deepmind/science-skills
- skills.sh installs
- 86.3K
- skills
- 37
Install
$ npx -y skills add google-deepmind/science-skills --agent claude-codeInstalls into .claude/skills of the current project.
Skills
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literature-search-arxivgoogle-deepmind/science-skillsSearch for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use whe3.5Kskills.sh installs
literature-search-arxivgoogle-deepmind/science-skillsSearch for scientific papers, preprints, and publications on arXiv. Extract metadata, abstracts, and download full-text PDFs or HTML versions of papers. Use whe3.5Kskills.sh installs2literature-search-openalexgoogle-deepmind/science-skillsQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords. Use when se3.2Kskills.sh installs
literature-search-openalexgoogle-deepmind/science-skillsQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords. Use when se3.2Kskills.sh installs3pubmed-databasegoogle-deepmind/science-skillsSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (ge2.8Kskills.sh installs
pubmed-databasegoogle-deepmind/science-skillsSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (ge2.8Kskills.sh installs4literature-search-europepmcgoogle-deepmind/science-skillsSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bib2.7Kskills.sh installs
literature-search-europepmcgoogle-deepmind/science-skillsSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bib2.7Kskills.sh installs5literature-search-biorxivgoogle-deepmind/science-skillsBrowse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing by da2.6Kskills.sh installs
literature-search-biorxivgoogle-deepmind/science-skillsBrowse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv. Supports fetching paper metadata by DOI, and browsing by da2.6Kskills.sh installs6uvgoogle-deepmind/science-skillsChecks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use when another skill requires uv as a prerequisit2.5Kskills.sh installs
uvgoogle-deepmind/science-skillsChecks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use when another skill requires uv as a prerequisit2.5Kskills.sh installs7workflow-skill-creatorgoogle-deepmind/science-skillsDistills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their workflow, interaction, or multi-step process2.5Kskills.sh installs
workflow-skill-creatorgoogle-deepmind/science-skillsDistills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their workflow, interaction, or multi-step process2.5Kskills.sh installs8clinical-trials-databasegoogle-deepmind/science-skillsQuery ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; che2.5Kskills.sh installs
clinical-trials-databasegoogle-deepmind/science-skillsQuery ClinicalTrials.gov via APIv2. Use when you want to search for trials by condition, drug, location, status, or phase; retrieve trial details by NCT ID; che2.5Kskills.sh installs9pdb-databasegoogle-deepmind/science-skillsUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searchin2.3Kskills.sh installs
pdb-databasegoogle-deepmind/science-skillsUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searchin2.3Kskills.sh installs10alphafold-database-fetch-and-analyzegoogle-deepmind/science-skillsRetrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence me2.3Kskills.sh installs
alphafold-database-fetch-and-analyzegoogle-deepmind/science-skillsRetrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence me2.3Kskills.sh installs11pubchem-databasegoogle-deepmind/science-skillsQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics. Use when a user asks about a 2.3Kskills.sh installs
pubchem-databasegoogle-deepmind/science-skillsQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics. Use when a user asks about a 2.3Kskills.sh installs12ncbi-sequence-fetchgoogle-deepmind/science-skillsRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus 2.3Kskills.sh installs
ncbi-sequence-fetchgoogle-deepmind/science-skillsRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus 2.3Kskills.sh installs13pymolgoogle-deepmind/science-skillsVisualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform structural 2.3Kskills.sh installs
pymolgoogle-deepmind/science-skillsVisualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform structural 2.3Kskills.sh installs14openfda-databasegoogle-deepmind/science-skillsQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparenc2.3Kskills.sh installs
openfda-databasegoogle-deepmind/science-skillsQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparenc2.3Kskills.sh installs15alphagenome-single-variant-analysisgoogle-deepmind/science-skillsAnalyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaG2.3Kskills.sh installs
alphagenome-single-variant-analysisgoogle-deepmind/science-skillsAnalyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaG2.3Kskills.sh installs16uniprot-databasegoogle-deepmind/science-skillsAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or retri2.3Kskills.sh installs
uniprot-databasegoogle-deepmind/science-skillsAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or retri2.3Kskills.sh installs17chembl-databasegoogle-deepmind/science-skillsQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures. Use when the user asks about compoun2.3Kskills.sh installs
chembl-databasegoogle-deepmind/science-skillsQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures. Use when the user asks about compoun2.3Kskills.sh installs18clinvar-databasegoogle-deepmind/science-skillsUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" 2.3Kskills.sh installs
clinvar-databasegoogle-deepmind/science-skillsUse when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" 2.3Kskills.sh installs19ensembl-databasegoogle-deepmind/science-skillsQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant c2.3Kskills.sh installs
ensembl-databasegoogle-deepmind/science-skillsQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant c2.3Kskills.sh installs20human-protein-atlas-databasegoogle-deepmind/science-skillsUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).2.3Kskills.sh installs
human-protein-atlas-databasegoogle-deepmind/science-skillsUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).2.3Kskills.sh installs21opentargets-databasegoogle-deepmind/science-skillsQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeu2.3Kskills.sh installs
opentargets-databasegoogle-deepmind/science-skillsQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeu2.3Kskills.sh installs22dbsnp-databasegoogle-deepmind/science-skillsUse when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in2.2Kskills.sh installs
dbsnp-databasegoogle-deepmind/science-skillsUse when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database. Resolves between rsIDs, genomic coordinates in2.2Kskills.sh installs23protein-sequence-msagoogle-deepmind/science-skillsPerforms multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conservation2.2Kskills.sh installs
protein-sequence-msagoogle-deepmind/science-skillsPerforms multiple sequence alignment of proteins with EBI Clustal Omega. Use when you need to align multiple sequences to assess similarity, domain conservation2.2Kskills.sh installs24protein-sequence-similarity-searchgoogle-deepmind/science-skillsSearches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger this whenever the user provides a protein se2.2Kskills.sh installs
protein-sequence-similarity-searchgoogle-deepmind/science-skillsSearches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback). Trigger this whenever the user provides a protein se2.2Kskills.sh installs25embl-ebi-olsgoogle-deepmind/science-skillsQuery and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, 2.2Kskills.sh installs
embl-ebi-olsgoogle-deepmind/science-skillsQuery and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, 2.2Kskills.sh installs26reactome-databasegoogle-deepmind/science-skillsQuery the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, f2.2Kskills.sh installs
reactome-databasegoogle-deepmind/science-skillsQuery the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, f2.2Kskills.sh installs27interpro-databasegoogle-deepmind/science-skillsIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genome2.2Kskills.sh installs
interpro-databasegoogle-deepmind/science-skillsIdentify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genome2.2Kskills.sh installs28string-databasegoogle-deepmind/science-skillsQuery the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specif2.2Kskills.sh installs
string-databasegoogle-deepmind/science-skillsQuery the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specif2.2Kskills.sh installs29foldseek-structural-searchgoogle-deepmind/science-skillsPerforms 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provid2.2Kskills.sh installs
foldseek-structural-searchgoogle-deepmind/science-skillsPerforms 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provid2.2Kskills.sh installs30gtex-databasegoogle-deepmind/science-skillsUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-dis2.2Kskills.sh installs
gtex-databasegoogle-deepmind/science-skillsUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-dis2.2Kskills.sh installs31jaspar-databasegoogle-deepmind/science-skillsQuery the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrices (PW2.2Kskills.sh installs
jaspar-databasegoogle-deepmind/science-skillsQuery the JASPAR database for Transcription Factor (TF) binding profiles. Use when retrieving Position Frequency Matrices (PFMs) or Position Weight Matrices (PW2.2Kskills.sh installs32gnomad-databasegoogle-deepmind/science-skillsQuery the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constraint met2.2Kskills.sh installs
gnomad-databasegoogle-deepmind/science-skillsQuery the Genome Aggregation Database (gnomAD). Use when determining the rarity or allele frequency of specific genetic variants, retrieving gene constraint met2.2Kskills.sh installs33quickgo-databasegoogle-deepmind/science-skillsQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellul2.2Kskills.sh installs
quickgo-databasegoogle-deepmind/science-skillsQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellul2.2Kskills.sh installs34encode-ccres-databasegoogle-deepmind/science-skillsQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments an2.2Kskills.sh installs
encode-ccres-databasegoogle-deepmind/science-skillsQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments an2.2Kskills.sh installs35ucsc-conservation-and-tfbsgoogle-deepmind/science-skillsFetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing whethe2.2Kskills.sh installs
ucsc-conservation-and-tfbsgoogle-deepmind/science-skillsFetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing whethe2.2Kskills.sh installs36unibind-databasegoogle-deepmind/science-skillsQueries the UniBind database for experimentally validated transcription factor (TF) binding sites. Use when retrieving direct TF-DNA interaction datasets, downl2.2Kskills.sh installs
unibind-databasegoogle-deepmind/science-skillsQueries the UniBind database for experimentally validated transcription factor (TF) binding sites. Use when retrieving direct TF-DNA interaction datasets, downl2.2Kskills.sh installs37scienceskillscommongoogle-deepmind/science-skillsShared Python package for Science Skills, currently containing http_client -- a unified HTTP client with rate limiting, retries, and exponential backoff. Not a 699skills.sh installs
scienceskillscommongoogle-deepmind/science-skillsShared Python package for Science Skills, currently containing http_client -- a unified HTTP client with rate limiting, retries, and exponential backoff. Not a 699skills.sh installs